BioExcel
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gromacs-2022-cp2k-tutorial
gromacs-2022-cp2k-tutorial PublicSample inputs and tutorial for GROMACS-2022/CP2K QMMM interface
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cp2K_qmmm_tutorials_for_biological_simulations
cp2K_qmmm_tutorials_for_biological_simulations PublicSeveral QM/MM tutorials for biological simulations adapted to CP2K. Tutorials adapted from AMBER, GMX, NAMD and CPMD softwares.
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Repositories
- biobb_pdb_tools Public
bioexcel/biobb_pdb_tools’s past year of commit activity - utils_biobb Public
bioexcel/utils_biobb’s past year of commit activity - biobb_wf_cmip Public
This tutorial aims to illustrate the process of computing classical molecular interaction potentials from protein structures, step by step, using the BioExcel Building Blocks library (biobb).
bioexcel/biobb_wf_cmip’s past year of commit activity - biobb_wf_pmx_tutorial Public
This tutorial aims to illustrate how to compute a fast-growth mutation free energy calculation, step by step, using the BioExcel Building Blocks library (biobb).
bioexcel/biobb_wf_pmx_tutorial’s past year of commit activity - biobb_wf_flexdyn Public
This tutorial aims to illustrate the process of generating protein conformational ensembles from 3D structures and analysing its molecular flexibility, step by step, using the BioExcel Building Blocks library (biobb).
bioexcel/biobb_wf_flexdyn’s past year of commit activity - biobb_gromacs Public
bioexcel/biobb_gromacs’s past year of commit activity - biobb_wf_haddock Public
This tutorials aim to illustrate the process of protein-protein docking, step by step, using HADDOCK with the BioExcel Building Blocks library (biobb).
bioexcel/biobb_wf_haddock’s past year of commit activity - biobb_cmip Public
bioexcel/biobb_cmip’s past year of commit activity - biobb_wf_virtual-screening Public
This tutorials aim to illustrate the process of protein-ligand docking, step by step, using the BioExcel Building Blocks library (biobb).
bioexcel/biobb_wf_virtual-screening’s past year of commit activity - biobb_wf_structure_checking Public
This tutorial aims to illustrate the process of checking a molecular structure before using it as an input for a Molecular Dynamics simulation using the BioExcel Building Blocks library (biobb).
bioexcel/biobb_wf_structure_checking’s past year of commit activity
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