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@MIC-DKFZ

MIC-DKFZ

Division of Medical Image Computing, German Cancer Research Center (DKFZ)

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  1. nnUNet nnUNet Public

    Python 8.1k 2.3k

  2. batchgenerators batchgenerators Public

    A framework for data augmentation for 2D and 3D image classification and segmentation

    Jupyter Notebook 1.2k 229

  3. trixi trixi Public

    Manage your machine learning experiments with trixi - modular, reproducible, high fashion. An experiment infrastructure optimized for PyTorch, but flexible enough to work for your framework and you…

    Python 226 21

  4. TractSeg TractSeg Public

    Automatic White Matter Bundle Segmentation

    Python 254 79

  5. basic_unet_example basic_unet_example Public

    An example project of how to use a U-Net for segmentation on medical images with PyTorch.

    Python 153 41

  6. nnDetection nnDetection Public

    nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that …

    Python 631 119

Repositories

Showing 10 of 118 repositories
  • napari-mlarray Public

    A reader/writer Napari plugin for MLArray images

    MIC-DKFZ/napari-mlarray’s past year of commit activity
    Python 1 MIT 0 0 1 Updated Mar 1, 2026
  • napari-voxtell Public
    MIC-DKFZ/napari-voxtell’s past year of commit activity
    Python 18 Apache-2.0 0 0 0 Updated Feb 27, 2026
  • mlarray Public

    Array format specialized for Machine Learning with Blosc2 backend and standardized metadata.

    MIC-DKFZ/mlarray’s past year of commit activity
    Python 18 MIT 0 0 0 Updated Feb 26, 2026
  • napari-nninteractive Public

    nnInteractive plugin for Napari - nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points, scribbles, bounding boxes, and lasso. Trained on 120+ diverse 3D datasets, it sets a new standard in accuracy, usability, and adaptability for clinical and research applications.

    MIC-DKFZ/napari-nninteractive’s past year of commit activity
    Python 107 Apache-2.0 15 11 3 Updated Feb 26, 2026
  • VoxTell Public

    Free-Text Promptable Universal 3D Medical Image Segmentation

    MIC-DKFZ/VoxTell’s past year of commit activity
    Python 151 Apache-2.0 11 3 0 Updated Feb 25, 2026
  • nnLandmark Public
    MIC-DKFZ/nnLandmark’s past year of commit activity
    Python 14 Apache-2.0 3 0 0 Updated Feb 24, 2026
  • MITK-Diffusion Public

    MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit

    MIC-DKFZ/MITK-Diffusion’s past year of commit activity
    C++ 102 16 5 0 Updated Feb 24, 2026
  • nnInteractive Public

    nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points, scribbles, bounding boxes, and lasso. Trained on 120+ diverse 3D datasets, it sets a new standard in accuracy, usability, and adaptability for clinical and research applications.

    MIC-DKFZ/nnInteractive’s past year of commit activity
    Python 363 Apache-2.0 42 17 1 Updated Feb 23, 2026
  • TractSeg Public

    Automatic White Matter Bundle Segmentation

    MIC-DKFZ/TractSeg’s past year of commit activity
    Python 254 Apache-2.0 79 61 2 Updated Feb 23, 2026
  • batchgeneratorsv2 Public
    MIC-DKFZ/batchgeneratorsv2’s past year of commit activity
    Python 27 Apache-2.0 16 0 5 Updated Feb 19, 2026
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