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@DessimozLab

Dessimoz Lab

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  1. read2tree read2tree Public

    a tool for inferring species tree from sequencing reads

    Python 158 19

  2. fold_tree fold_tree Public

    Infers a phylogenetic tree from protein structures

    Jupyter Notebook 99 17

  3. FastOMA FastOMA Public

    FastOMA is a scalable software package to infer orthology relationship.

    Python 91 17

  4. OMArk OMArk Public

    Python 90 7

  5. edgehog edgehog Public

    Infering ancestral synteny with hierarchical orthologous groups

    Python 38 3

  6. phylo-io phylo-io Public

    Phylo.IO JS tree viewer

    JavaScript 35 11

Repositories

Showing 10 of 56 repositories
  • ESM3di Public

    using ESM2 to translate amino acids to 3di sequences to create foldseek

    DessimozLab/ESM3di’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Mar 4, 2026
  • nf-oma-browser-build Public

    Nextflow pipeline to convert OMA to OMA browser

    DessimozLab/nf-oma-browser-build’s past year of commit activity
    Nextflow 2 MIT 0 0 0 Updated Mar 4, 2026
  • FastOMA Public

    FastOMA is a scalable software package to infer orthology relationship.

    DessimozLab/FastOMA’s past year of commit activity
    Python 91 MPL-2.0 17 8 6 Updated Mar 4, 2026
  • fastoma-bench Public

    Automatic benchmarking of Fastoma over time

    DessimozLab/fastoma-bench’s past year of commit activity
    Python 2 0 0 0 Updated Mar 4, 2026
  • fold_tree Public

    Infers a phylogenetic tree from protein structures

    DessimozLab/fold_tree’s past year of commit activity
    Jupyter Notebook 99 MIT 17 9 0 Updated Mar 3, 2026
  • pyoma Public

    Python library to interact with OMA hdf5 files

    DessimozLab/pyoma’s past year of commit activity
    Python 1 MPL-2.0 0 0 3 Updated Feb 27, 2026
  • django-matomo-api-tracking Public

    Django Matomo app allowing server side traffic tracking

    DessimozLab/django-matomo-api-tracking’s past year of commit activity
    Python 1 1 0 2 Updated Feb 24, 2026
  • foldtree2 Public

    foldtree2

    DessimozLab/foldtree2’s past year of commit activity
    Jupyter Notebook 9 AGPL-3.0 4 6 0 Updated Feb 22, 2026
  • matreex Public
    DessimozLab/matreex’s past year of commit activity
    HTML 17 2 0 0 Updated Feb 16, 2026
  • ampliphy Public

    Improve phylogenetic inference by amplifying multiple sequence alignment with homologous sequences

    DessimozLab/ampliphy’s past year of commit activity
    Nextflow 4 MIT 1 0 0 Updated Feb 13, 2026
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