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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 32 10

  2. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 31 19

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 17 13

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 14 3

  5. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 12 3

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 10 4

Repositories

Showing 10 of 583 repositories
  • aind-metadata-viz Public

    Website for public metadata visualization

    AllenNeuralDynamics/aind-metadata-viz’s past year of commit activity
    Python 0 MIT 0 3 1 Updated Mar 17, 2026
  • aind-metadata-validator Public

    Package to support validation checks for aind-data-schema for export to other services

    AllenNeuralDynamics/aind-metadata-validator’s past year of commit activity
    Python 0 MIT 0 3 0 Updated Mar 17, 2026
  • zombie-squirrel Public

    Caching tools for storing expensive DocDB queries and S3 data tables in Redshift

    AllenNeuralDynamics/zombie-squirrel’s past year of commit activity
    Python 0 MIT 0 4 2 Updated Mar 17, 2026
  • harp.device.quad-dac Public

    0364: This repository contains the hardware, firmware, and software related to the Harp quad DAC

    AllenNeuralDynamics/harp.device.quad-dac’s past year of commit activity
    C++ 0 MIT 0 30 1 Updated Mar 17, 2026
  • aind-metadata-service Public

    REST API to compile metadata from various databases

    AllenNeuralDynamics/aind-metadata-service’s past year of commit activity
    Python 3 MIT 1 11 0 Updated Mar 16, 2026
  • voxel Public

    General purpose microscope control repository.

    AllenNeuralDynamics/voxel’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 16, 2026
  • aind-exaspim-data-transformation Public

    A library to convert imaris (ims) files to zarr v3 in the compression step of the aind-data-transfer-service upload process from AIND network to S3 bucket.

    AllenNeuralDynamics/aind-exaspim-data-transformation’s past year of commit activity
    Python 0 MIT 0 0 8 Updated Mar 16, 2026
  • aind-pophys-pipeline Public

    2P planar optical physiology processing pipeline

    AllenNeuralDynamics/aind-pophys-pipeline’s past year of commit activity
    Nextflow 0 MIT 0 1 0 Updated Mar 16, 2026
  • aind-vr-foraging-pipeline Public

    Pipeline for VR Foraging Task

    AllenNeuralDynamics/aind-vr-foraging-pipeline’s past year of commit activity
    Nextflow 0 0 1 0 Updated Mar 16, 2026
  • aind-metadata-mcp Public

    MCP server for AIND metadata

    AllenNeuralDynamics/aind-metadata-mcp’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Mar 16, 2026

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